91Ó°ÊÓ

Orton, RJ., Sturm, OE., Gormand, A., Kolch, W. and Gilbert, DR. (2008) ''. IET Systems Biology, 2 (4). pp. 173 - 183. ISSN: 1751-8849

Donaldson, R. and Gilbert, D. (2008) 'A Monte Carlo Model checker for probabilistic LTL with numerical constraints'. Place of publication: Department of Computer Science at University of Glasgow.

Oehm, S., Gilbert, D., Tauch, A., Stoye, J. and Goesmann, A. (2008) ''. Nucleic Acids Research, 36 (suppl_2). pp. W433 - W437. ISSN: 0305-1048

Jourdan, F., Breitling, R., Barrett, MP. and Gilbert, D. (2008) ''. Bioinformatics, 24 (1). pp. 143 - 145. ISSN: 1367-4803

Veeramalai, M. and Gilbert, D. (2008) ''. Bioinformatics, 24 (23). pp. 2698 - 2705. ISSN: 1367-4803

Nebel, J-C., Herzyk, P. and Gilbert, DR. (2007) ''. BMC Bioinformatics, 8 (1). pp. 321. ISSN: 1471-2105

Gu, X., Gilbert, D., Higham, D. and Houslay, M. (2007) ''. BMC Systems Biology, 1 (Supplement 1). ISSN: 1752-0509

Al-Shahib, A., Breitling, R. and Gilbert, DR. (2007) ''. BMC Genomics, 8 (1). pp. 78 - 78. ISSN: 1471-2164

Park, SH., Gilbert, D. and Ryu, KH. (2007) ''.5th Asia-Pacific Bioinformatics Conference (APBC2007). Hong Kong, Peoples Republic of China. 15 - 17 January. PUBLISHED BY IMPERIAL COLLEGE PRESS AND DISTRIBUTED BY WORLD SCIENTIFIC PUBLISHING CO.. pp. 341 - 351. ISSN: 1751-6404

Al-Shahib, A., Gilbert, D. and Breitling, R. (2007) ''. Springer Berlin Heidelberg. pp. 890 - 897. ISSN: 0302-9743

Gilbert, D., Heiner, M. and Lehrack, S. (2007) 'A unifying framework for modelling and analysing biochemical pathways using Petri nets', in Calder, M. and Gilmore, S. (eds.) Computational Methods in Systems Biology. Springer Berlin Heidelberg. , 4695/2007. pp. 200 - 216. ISBN 13: 9783540751397.

Viksna, J. and Gilbert, D. (2007) ''. Bioinformatics, 23 (7). pp. 832 - 841. ISSN: 1367-4803

Reyes, JA. and Gilbert, D. (2007) ''. Journal of Integrative Bioinformatics, 4 (3). pp. 77. ISSN: 1613-4516

Viksna, J. and Gilbert, DR. (2007) ''. Bioinform., 23. pp. 832 - 841.

Gilbert, D. and Heiner, M. (2006) 'From Petri Nets to differential equations: An integrative approach for biochemical network analysis'.27th International Conference on Application and Theory of Petri Nets and other models of concurrency (ATPN06). Turku, Finland. 26 - 30 June. ATPN. pp. 181 - 200.

Gilbert, D. and Heiner, M. (2006) 'From Petri nets to differential equations - An integrative approach for biochemical network analysis', in Donatelli, S. and Thiagarajan, PS. (eds.) Petri Nets and Other Models of Concurrency - ICATPN 2006. Springer Berlin Heidelberg. , 4024/2006. pp. 181 - 200. ISBN 10: 3-540-34699-6. ISBN 13: 9783540346999.

Calder, M., Vyshemirsky, V., Gilbert, D. and Orton, R. (2006) 'Analysis of signalling pathways using continuous time Markov chains', in Priami, C. and Plotkin, G. (eds.) Transactions on Computational Systems Biology VI. Springer Berlin Heidelberg. , 4220/2006. pp. 44 - 67. ISBN 10: 3-540-45779-8. ISBN 13: 9783540457794.

Gilbert, D., Fuß, H., Gu, X., Orton, R., Robinson, S., Vyshemirsky, V., Kurth, MJ., Downes, CS. and Dubitzky, W. et al. (2006) ''. Briefings in Bioinformatics, 7 (4). pp. 339 - 353. ISSN: 1467-5463

Morrison, JL., Breitling, R., Higham, DJ. and Gilbert, DR. (2006) ''. Bioinformatics, 22 (16). pp. 2012 - 2019. ISSN: 1367-4803

Morrison, JL., Breitling, R., Higham, DJ. and Gilbert, DR. (2005) ''. BMC Bioinformatics, 6 (1). pp. 233. ISSN: 1471-2105

Park, SH., Ryu, KHO. and Gilbert, D. (2005) ''. International Journal of Neural Systems, 15 (4). pp. 287 - 296. ISSN: 0129-0657

Calder, M., Vyshemirsky, V., Gilbert, D. and Orton, R. (2005) 'Analysis of signalling pathways using the prism model checker'.3rd International Computational Methods in Systems Biology (CMSB 2005). University of Edinburgh. 3 - 5 April. University of Edinburgh. pp. 179 - 190.

Torrance, GM., Gilbert, DR., Michalopoulos, I. and Westhead, DR. (2005) ''. Bioinformatics, 21 (10). pp. 2537 - 2538. ISSN: 1367-4803

Kolch, W., Calder, M. and Gilbert, D. (2005) ''. FEBS Letters, 579 (8). pp. 1891 - 1895. ISSN: 0014-5793

Al-Shahib, A., Breitling, R. and Gilbert, D. (2005) ''. International Journal of Neural Systems, 15 (4). pp. 259 - 275. ISSN: 0129-0657

Orton, RJ., Sturm, OE., Vyshemirsky, V., Calder, M., Gilbert, DR. and Kolch, W. (2005) ''. Biochemical Journal, 392 (2). pp. 249 - 261. ISSN: 0264-6021

Al-Shahib, A., Breitling, R. and Gilbert, D. (2005) ''. Applied Bioinformatics, 4 (3). pp. 195 - 203. ISSN: 1175-5636

Viksna, J., Gilbert, D. and Torrance, G. (2004) 'Domain discovery method for topological profile searches in protein structures'.International Conference on Genome Informatics( GIW 2004). Yokohoma. 14 - 17 December. Universal Academy Press. pp. 72 - 81. ISSN: 0919-9454

Thornton, JM., Gilbert, DR. and Brooksbank, C. (2004) ''. Oxford University Press (OUP). pp. i3 - i5. ISSN: 1367-4803

Al-Shahib, A., He, C., Tan, AC., Girolami, M. and Gilbert, D. (2004) 'An assessment of feature relevance in predicting protein function from sequence', in Yang, ZR., Everson, R. and Yin, H. (eds.) Intelligent Data Engineering and Automated Learning – IDEAL 2004. Springer Berlin Heidelberg. , 3177/2004. pp. 52 - 57. ISBN 10: 3-540-22881-0. ISBN 13: 9783540228813.

Michalopoulos, I., Torrance, GM., Gilbert, DR. and Westhead, DR. (2004) ''. Nucleic Acids Research, 32 (DATABASE ISS.). pp. 251D - 254. ISSN: 0305-1048

Nasir, L., Gault, E., Campbell, S., Veeramalai, M., Gilbert, D., McFarlane, R., Munro, A. and Argyle, DJ. et al. (2004) ''. Gene, 336 (1). pp. 105 - 113. ISSN: 0378-1119

Ren, T., Veeramalai, M., Tan, AC. and Gilbert, D. (2004) ''. Applied Bioinformatics, 3 (2-3). pp. 149 - 158. ISSN: 1175-5636

Tan, A., Gilbert, D. and Deville, Y. (2003) 'Multi-class protein fold classification using a new ensemble machine learning approach.'.14th International Conference on Genome Informatics (GIW 2003). Yokohama, Japan. 14 - 17 December. GIW. pp. 206 - 217.

Tan, AC., Gilbert, D. and Deville, Y. (2003) 'Integrative machine learning approach for multi-class SCOP protein fold classification'.German Conference on Bioinformatics (GCB 2003). Neuherberg. 12 - 14 October. GCB. pp. 153 - 159.

Jacquet, JM., Brim, L., Gilbert, D. and Křetínský, M. (2003) ''. Electronic Notes in Theoretical Computer Science, 68 (3). pp. 347 - 370. ISSN: 1571-0661

Tan, AC. and Gilbert, D. (2003) 'An empirical comparison of supervised machine learning techniques in bioinformatics'.First Asia Pacific Bioinformatics Conference (APBC 2003). Adelaide, Australia. 4 - 7 February. Australian Computer Society. pp. 219 - 222.

Gilbert, D., Westhead, D. and Viksna, J. (2003) 'Techniques for comparison, pattern matching and pattern discovery: from sequences to protein topology', in Frasconi, P. and Shamir, S. (eds.) Artificial intelligence and heuristic methods in bioinformatics. IOS PRESS. , 183. pp. 128 - 147. ISBN 10: 1-58603-294-1.

Deville, Y., Gilbert, D., van Helden, J. and Wodak, S. (2003) 'An overview of data models for the analysis of biochemical pathways (Abstract only)', in Priami, C. (ed.) Computational Methods in Systems Biology. Springer Berlin Heidelberg. , 2602/2003. pp. 174. ISBN 10: 3-540-00605-2. ISBN 13: 9783540006053.

Viksna, J., Gilbert, DR. and Torrance, GM. (2003) 'Protein structure comparison based o n profiles of topological motifs: a feasible way to deal with information from negative examples.'. German Conference on Bioinformatics. pp. 159 - 165.

Deville, Y., Gilbert, D., van Helden, J. and Wodak, SJ. (2003) ''. Briefings in bioinformatics, 4 (3). pp. 246 - 259. ISSN: 1467-5463

Williams, A., Gilbert, D. and Westhead, DR. (2003) ''. Protein Engineering, 16 (12). pp. 913 - 923. ISSN: 0269-2139

Tan, AC., Gilbert, D. and Deville, Y. (2003) 'Multi-class protein fold classification using a new ensemble machine learning approach'. Genome Informatics, 14. pp. 206 - 217. ISSN: 0919-9454

Tan, AC. and Gilbert, D. (2003) 'Ensemble machine learning on gene expression data for cancer classification'. Applied Bioinformatics, 2 (3 Suppl). pp. S75 - S83. ISSN: 1175-5636

Brim, L., Kretinsky, M., Jacquet, JM. and Gilbert, D. (2002) 'Modelling multi-agent systems as synchronous concurrent constraint processes'. Computing and Informatics, 21 (6). pp. 565 - 590. ISSN: 1335-9150

Tan, AC., Gilbert, D. and Tuson, A. (2002) 'Characterisation of FAD-family folds using a machine learning approach'.International Conference on Bioinformatics, (INCOB 2002). Bangkok, Thailand. INCOB.

Gilbert, D., Westhead, V., Viksna, J. and Thornton, J. (2001) ''. Journal of Computers and Chemistry, 26 (1). pp. 23 - 30. ISSN: 0097-8485

Brim, L., Gilbert, D., Jacquet, JM. and Kretinsky, M. (2001) ''.28th Conference on Current Trends in Theory and Practice of Informatics Piestany (SOFSEM 2001). Slovak Republic. 24 - 1 December. Springer-Verlag. pp. 201 - 210. ISSN: 0302-9743

Viksna, J. and Gilbert, D. (2001) ''.First International Workshop on Algorithms in BioInformatics BRICS. University of Aarhus, Denmark. 28 - 31 August. Springer. pp. 98 - 111. ISSN: 0302-9743

Backofen, R. and Gilbert, D. (2001) ''. Constraints, 6 (2/3). pp. 141 - 156. ISSN: 1383-7133

Eidhammer, I., Jonassen, J., Grindhaug, SH., Gilbert, D. and Ratnayake, M. (2001) ''. Constraints, 6 (2/3). pp. 173 - 200. ISSN: 1383-7133